Orthologous cluster atlas
Compare cluster overlap, single-copy families, species membership and protein-level evidence from one preview surface.
Comparative genomics preview platform
OrthoVennPlus
A modern workspace for orthologous cluster analysis, evolutionary interpretation and publication-ready interactive result previews.
Clusteroverlap, search and GO summaries
Evolutiontree, CAFE, selection and synteny
Rerunproject versions and tuned parameters
Features
Built for scientific result interpretation
From raw module output to concise interactive pages, the interface keeps data inspection, visualization and export close together.
Evolution-ready analysis
Inspect species trees, CAFE expansion/contraction, positive selection, gene trees and collinearity in dedicated scientific views.
Traceable result files
Every preview keeps direct access to source TSV, FASTA, Newick and JSON outputs for reproducible downstream analysis.
Project version reruns
Tune analysis parameters, create a new project version and keep every result tied to a clear workflow snapshot.
Analysis modules
Complete comparative genomics modules in one project
Core orthology, functional annotation and evolutionary modules are organized as inspectable result pages with source files and exports.
Orthogroups
Cluster proteins into comparable gene families.
Overlap and single-copy
Inspect shared, unique and single-copy orthologous groups.
GO annotation
Summarize functional terms and annotated accessions.
GO enrichment
Test enriched biological signals for selected cluster sets.
Species tree
Render phylogenetic trees with species-level cluster statistics.
Expansion and contraction
Explore CAFE gene family changes across the time tree.
Collinearity
Compare chromosome-level synteny blocks across species.
Positive selection
Run ABSREL, MEME, BUSTED and PAML branch-site analyses.
Cluster detail
Open protein networks, gene trees and neighborhood context.
Gallery finalize
Generate shareable preview metadata and visual summaries.
Project version control
Iterate on analysis with clear project versions
OrthoVennPlus keeps reruns under project versions. You can adjust workflow parameters, run optional modules on demand, inspect each version state and keep the preview connected to the exact output files.
Project-level rerun planning
Review all analysis parameters together and create a new version when compute settings change.
Traceable version history
Keep completed, failed and running project versions visible with logs and files tied to the exact workflow snapshot.
On-demand analysis support
Run cluster detail, positive selection and other target-specific modules from the selected project version.
Cluster detailon demand
v1.1default cluster parameters
completed
v2.1gene neighborhood enabled
running
v3.1rerun with updated foreground branch
planned
Workflow
One workspace from computation to preview
The workspace keeps project setup, module execution, logs, files and preview pages in the same place, so analysis decisions stay connected to the generated results.
Project statusModule logsProject versionsPreview linksFile downloads
1
Upload genomes
Create a project from species data and keep inputs organized.
2
Build orthogroups
Generate the core cluster set used by downstream modules.
3
Tune analysis parameters
Adjust advanced options only where the analysis needs them.
4
Create project versions
Rerun the affected workflow steps under a single project version.
5
Explore previews
Open interactive pages, download source files and share results.